PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000085G0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 203aa    MW: 21431.2 Da    PI: 10.309
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000085G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.3e-1755104355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + GVr+++ +gr++AeIrd + ng  +r++lg+f++ae Aa a+++a+ + +g
  PH01000085G0010  55 FIGVRRRP-WGRFAAEIRDSTRNG--ARVWLGTFDSAEAAAMAYDQAAFSARG 104
                      57******.**********44465..***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.1E-3054118IPR001471AP2/ERF domain
PROSITE profilePS5103221.77354112IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-2155114IPR016177DNA-binding domain
PRINTSPR003672.7E-85566IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-2755113IPR001471AP2/ERF domain
CDDcd000184.83E-1555113No hitNo description
PfamPF008471.4E-1255104IPR001471AP2/ERF domain
PRINTSPR003672.7E-87894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MKRHHNHGMY SGYMAAATTS SSSSSSDSLP FDVSGGDEMP APLSRSAGAA ASAAFIGVRR  60
RPWGRFAAEI RDSTRNGARV WLGTFDSAEA AAMAYDQAAF SARGPAAALN FPVERVKESL  120
SALALGAAGD SPVLALKRRH SKRKRRKKSE LAAVATKNAA TGRIKSSSAA AAAEQKRFVV  180
ELEDLGAEYL EELLRISELC DL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2355113361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2355113664ATERF1
3gcc_A2e-2355113664ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137143RRHSKRK
2141146KRKRRK
3141147KRKRRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0626122e-98AK062612.1 Oryza sativa Japonica Group cDNA clone:001-105-A10, full insert sequence.
GenBankAP0053252e-98AP005325.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0710F09.
GenBankAP0149632e-98AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126152e-98CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959050.11e-53PREDICTED: ethylene-responsive transcription factor 1-like
RefseqXP_015646205.19e-54PREDICTED: ethylene-responsive transcription factor 15
SwissprotQ8LDC83e-45ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0D9WX072e-55A0A0D9WX07_9ORYZ; Uncharacterized protein
STRINGBGIOSGA024428-PA3e-53(Oryza sativa Indica Group)
STRINGLOC_Os07g22770.13e-53(Oryza sativa Japonica Group)
STRINGORGLA07G0097100.13e-53(Oryza glaberrima)
STRINGSi033089m4e-53(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-23ethylene response factor 1